Transcript: lnc-TENM4-1:2

Basic information

LNCipedia transcript ID: lnc-TENM4-1:2 
LNCipedia gene ID: lnc-TENM4-1
Ensembl Gene ID: ENSG00000255209
Ensembl Transcript ID: ENST00000526851
Location (hg38): chr11:79604967-79612300
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 834 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000526851; ENST00000526851.1; RP11-258O13.1-001; OTTHUMT00000391460.1; NONHSAT023314
Alternative gene names: ENSG00000255209; RP11-258O13.1; ENSG00000255209.1; OTTHUMG00000166787.1; AP001978.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -181.4378 non-coding 
CPAT coding probability 1.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TENM4-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ODZ4-1:1
3.1 lnc-ODZ4-1:1
4.0 lnc-ODZ4-1:1
4.1 lnc-ODZ4-1:1
5.0 lnc-ODZ4-1:1
5.1 lnc-TENM4-1:1
5.2 lnc-TENM4-1:2