Transcript: lnc-TENM4-4:3

Basic information

LNCipedia transcript ID: lnc-TENM4-4:3 
LNCipedia gene ID: lnc-TENM4-4
Ensembl Gene ID: ENSG00000255178
Ensembl Transcript ID: ENST00000526840
Location (hg38): chr11:80751200-80762826
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1571 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000526840; ENST00000526840.1; RP11-686G23.2-001; OTTHUMT00000391477.1; NONHSAT023327
Alternative gene names: ENSG00000255178; RP11-686G23.2; ENSG00000255178.1; OTTHUMG00000166793.1; AP002759.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.9573 non-coding 
CPAT coding probability 9.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TENM4-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ODZ4-4:1
3.1 lnc-ODZ4-4:1
4.0 lnc-ODZ4-4:1
4.1 lnc-ODZ4-4:1
5.0 lnc-ODZ4-4:1
5.1 lnc-TENM4-12:1
5.2 lnc-TENM4-4:3