Transcript: lnc-TET2-5:1

Basic information

LNCipedia transcript ID: lnc-TET2-5:1 
LNCipedia gene ID: lnc-TET2-5
Ensembl Gene ID: ENSG00000251170
Ensembl Transcript ID: ENST00000514327
Location (hg38): chr4:104230380-104411035
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 567 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007582; ENST00000514327; ENST00000514327.1; RP11-729M20.1-001; OTTHUMT00000363219.1; NONHSAT097646; ENST00000514327.5
Alternative gene names: XLOC_003631; linc-TET2-3; ENSG00000251170; RP11-729M20.1; ENSG00000251170.1; OTTHUMG00000160975.1; ENSG00000251170.5; AC004052.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.4436 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TET2-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TET2-4:1
3.1 lnc-TET2-5:1
4.0 lnc-TET2-5:1
4.1 lnc-TET2-5:1
5.0 lnc-TET2-5:1
5.1 lnc-C4orf17-45:1
5.2 lnc-TET2-5:1