Transcript: lnc-TET3-2:1

Basic information

LNCipedia transcript ID: lnc-TET3-2:1 
LNCipedia gene ID: lnc-TET3-2
Ensembl Gene ID: ENSG00000235499
Ensembl Transcript ID: ENST00000441217
Location (hg38): chr2:73985132-73986343
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 390 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002934; ENST00000441217; ENST00000441217.1; AC073046.25-001; OTTHUMT00000328143.2; NONHSAT071649
Alternative gene names: XLOC_001531; linc-TET3; ENSG00000235499; AC073046.25; ENSG00000235499.1; OTTHUMG00000152824.2; AC073046.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.6707 non-coding 
CPAT coding probability 8.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TET3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TET3-2:1
3.1 lnc-TET3-2:1
4.0 lnc-TET3-2:1
4.1 lnc-TET3-2:1
5.0 lnc-TET3-2:1
5.1 lnc-POLE4-45:2
5.2 lnc-TET3-2:1