Transcript: lnc-TET3-5:1

Basic information

LNCipedia transcript ID: lnc-TET3-5:1 
LNCipedia gene ID: lnc-TET3-5
Ensembl Gene ID: ENSG00000217702
Ensembl Transcript ID: ENST00000616370
Location (hg38): chr2:74130583-74135394
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 494 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000616370.1
Alternative gene names: ENSG00000217702.2; RP11-287D1.4; AC073263.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -425.6314 non-coding 
CPAT coding probability 3.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TET3-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC073263.1-5:1
4.1 lnc-AC073263.1-5:1
5.0 lnc-AC073263.1-5:1
5.1 lnc-POLE4-39:1
5.2 lnc-TET3-5:1