Transcript: lnc-TEX261-2:1

Basic information

LNCipedia transcript ID: lnc-TEX261-2:1 
LNCipedia gene ID: lnc-TEX261-2
Ensembl Gene ID: ENSG00000236469
Ensembl Transcript ID: ENST00000434990
Location (hg38): chr2:71002531-71064743
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 570 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434990.1; AC007040.8-001; OTTHUMT00000332235.4; NONHSAT071531
Alternative gene names: ENSG00000236469.1; AC007040.8; OTTHUMG00000153726.4; AC007881.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.5778 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TEX261-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TEX261-2:1
4.0 lnc-TEX261-2:1
4.1 lnc-TEX261-2:1
5.0 lnc-TEX261-2:1
5.1 lnc-GKN2-45:1
5.2 lnc-TEX261-2:1