Transcript: lnc-TEX35-1:2

Basic information

LNCipedia transcript ID: lnc-TEX35-1:2 
LNCipedia gene ID: lnc-TEX35-1
Ensembl Gene ID: ENSG00000213057
Ensembl Transcript ID: ENST00000521244
RefSeq ID: NR_033186
Location (hg38): chr1:178542796-178548889
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2577 bp
Exons: 3
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_033186; ENST00000521244.1; NR_033186.1
Alternative gene names: ENSG00000213057.5; C1orf220


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.2436 non-coding 
CPAT coding probability 11.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TEX35-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf220-1:1
4.0 lnc-C1orf220-1:1
4.1 lnc-C1orf220-1:1
5.0 lnc-C1orf220-1:1
5.1 lnc-SOAT1-17:2
5.2 lnc-TEX35-1:2