Transcript: lnc-TEX35-3:1

Basic information

LNCipedia transcript ID: lnc-TEX35-3:1 
LNCipedia gene ID: lnc-TEX35-3
Location (hg38): chr1:178480607-178481206
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 600 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000564300.1; RP4-593C16.3-001; OTTHUMT00000431555.1; NONHSAT007819
Alternative gene names: ENSG00000260938.1; RP4-593C16.3; OTTHUMG00000176134.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.0808 non-coding 
CPAT coding probability 0.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TEX35-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RASAL2-1:1
4.0 lnc-RASAL2-1:1
4.1 lnc-RASAL2-1:1
5.0 lnc-RASAL2-1:1
5.1 lnc-SOAT1-18:1
5.2 lnc-TEX35-3:1