Transcript: lnc-TEX53-2:7

Basic information

LNCipedia transcript ID: lnc-TEX53-2:7 
LNCipedia gene ID: lnc-TEX53-2
Location (hg38): chr9:114656304-114657772
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 436 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: TCONS_00015871; ENST00000423632; ENST00000423632.1; RP11-402G3.5-001; OTTHUMT00000053785.1
Alternative gene names: XLOC_007832; linc-DFNB31-1; ENSG00000230054; RP11-402G3.5; ENSG00000230054.1; OTTHUMG00000020544.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.2929 non-coding 
CPAT coding probability 7.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TEX53-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TNFSF15-2:6
3.1 lnc-TNFSF15-2:6
4.0 lnc-TNFSF15-2:6
4.1 lnc-TNFSF15-2:6
5.0 lnc-TNFSF15-2:6
5.1 lnc-TNFSF8-7:7
5.2 lnc-TEX53-2:7