Transcript: lnc-TFCP2-3:1

Basic information

LNCipedia transcript ID: lnc-TFCP2-3:1 
LNCipedia gene ID: lnc-TFCP2-3
Ensembl Gene ID: ENSG00000278126
Ensembl Transcript ID: ENST00000620274
Location (hg38): chr12:51201684-51202581
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 898 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000620274.1
Alternative gene names: ENSG00000278126.1; RP11-454E5.4; AC139768.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.2948 non-coding 
CPAT coding probability 1.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TFCP2-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TFCP2-3:1
4.1 lnc-TFCP2-3:1
5.0 lnc-TFCP2-3:1
5.1 lnc-BIN2-3:1
5.2 lnc-TFCP2-3:1