Transcript: lnc-TFDP2-4:1

Basic information

LNCipedia transcript ID: lnc-TFDP2-4:1 
LNCipedia gene ID: lnc-TFDP2-4
Ensembl Gene ID: ENSG00000261826
Ensembl Transcript ID: ENST00000567488
Location (hg38): chr3:140865075-140867783
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2709 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567488.1; RP11-691G17.1-001; OTTHUMT00000431121.1
Alternative gene names: ENSG00000261826.1; RP11-691G17.1; OTTHUMG00000175815.1; AC121333.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.0343 non-coding 
CPAT coding probability 43.33% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TFDP2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TFDP2-4:1
4.0 lnc-TFDP2-4:1
4.1 lnc-TFDP2-4:1
5.0 lnc-TFDP2-4:1
5.1 lnc-TFDP2-4:1
5.2 lnc-TFDP2-4:1