Transcript: lnc-TG-4:1

Basic information

LNCipedia transcript ID: lnc-TG-4:1 
LNCipedia gene ID: lnc-TG-4
Location (hg38): chr8:133229056-133229697
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 642 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: NONHSAT129217; ENST00000602893.1
Alternative gene names: ENSG00000270132.1; WISP1-OT1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -242.9831 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TG-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WISP1-5:2
4.0 WISP1-OT1:1
4.1 WISP1-OT1:1
5.0 WISP1-OT1:1
5.1 lnc-MYC-49:1
5.2 lnc-TG-4:1