Transcript: lnc-TGFBI-80:1

Basic information

LNCipedia transcript ID: lnc-TGFBI-80:1 
LNCipedia gene ID: lnc-TGFBI-80
Location (hg38): chr5:135812567-135824661
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 619 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010100; NONHSAT103929
Alternative gene names: XLOC_004565; linc-SLC25A48-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.5802 non-coding 
CPAT coding probability 67.50% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TGFBI-80:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC25A48-1:1
3.1 lnc-SLC25A48-2:1
4.0 lnc-SLC25A48-2:1
4.1 lnc-SLC25A48-2:1
5.0 lnc-SLC25A48-2:1
5.1 lnc-PDLIM4-80:1
5.2 lnc-TGFBI-80:1