Transcript: lnc-TGFBI-80:2

Basic information

LNCipedia transcript ID: lnc-TGFBI-80:2 
LNCipedia gene ID: lnc-TGFBI-80
Ensembl Gene ID: ENSG00000250378
Ensembl Transcript ID: ENST00000506592
Location (hg38): chr5:135812667-135826582
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 377 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009520; ENST00000506592; ENST00000506592.1; RP11-119J18.1-001; OTTHUMT00000371685.2; NONHSAT103930
Alternative gene names: XLOC_004565; linc-SLC25A48-1; ENSG00000250378; RP11-119J18.1; ENSG00000250378.1; OTTHUMG00000163102.2; ENSG00000250378.3; AC114296.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.5802 non-coding 
CPAT coding probability 2.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGFBI-80:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC25A48-1:2
3.1 lnc-SLC25A48-2:2
4.0 lnc-SLC25A48-2:2
4.1 lnc-SLC25A48-2:2
5.0 lnc-SLC25A48-2:2
5.1 lnc-PDLIM4-80:2
5.2 lnc-TGFBI-80:2