Transcript: lnc-TGFBI-80:5

Basic information

LNCipedia transcript ID: lnc-TGFBI-80:5 
LNCipedia gene ID: lnc-TGFBI-80
Location (hg38): chr5:135821717-135826566
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 950 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00010793
Alternative gene names: XLOC_004565; linc-SLC25A48-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -287.2204 non-coding 
CPAT coding probability 84.83% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TGFBI-80:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC25A48-1:3
3.1 lnc-SLC25A48-2:5
4.0 lnc-SLC25A48-2:5
4.1 lnc-SLC25A48-2:5
5.0 lnc-SLC25A48-2:5
5.1 lnc-PDLIM4-80:5
5.2 lnc-TGFBI-80:5