Transcript: lnc-TGFBR2-1:1

Basic information

LNCipedia transcript ID: lnc-TGFBR2-1:1 
LNCipedia gene ID: lnc-TGFBR2-1
Ensembl Gene ID: ENSG00000261468
Ensembl Transcript ID: ENST00000561507
Location (hg38): chr3:30697661-30699576
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1916 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561507.1; RP11-1024P17.1-001; OTTHUMT00000430879.1; NONHSAT088828
Alternative gene names: ENSG00000261468.1; RP11-1024P17.1; OTTHUMG00000175700.1; AC096921.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -98.4694 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGFBR2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TGFBR2-1:1
4.0 lnc-TGFBR2-1:1
4.1 lnc-TGFBR2-1:1
5.0 lnc-TGFBR2-1:1
5.1 lnc-STT3B-1:11
5.2 lnc-TGFBR2-1:1