Transcript: lnc-TGFBRAP1-11:2

Basic information

LNCipedia transcript ID: lnc-TGFBRAP1-11:2 
LNCipedia gene ID: lnc-TGFBRAP1-11
Location (hg38): chr2:104297596-104339014
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 482 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004359; NONHSAT072905
Alternative gene names: XLOC_002236; linc-MFSD9-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.6706 non-coding 
CPAT coding probability 15.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGFBRAP1-11:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TGFBRAP1-10:2
3.1 lnc-TGFBRAP1-11:2
4.0 lnc-TGFBRAP1-11:2
4.1 lnc-TGFBRAP1-11:2
5.0 lnc-TGFBRAP1-11:2
5.1 lnc-AFF3-68:2
5.2 lnc-TGFBRAP1-11:2