Transcript: lnc-TGFBRAP1-14:1

Basic information

LNCipedia transcript ID: lnc-TGFBRAP1-14:1 
LNCipedia gene ID: lnc-TGFBRAP1-14
Ensembl Gene ID: ENSG00000272861
Ensembl Transcript ID: ENST00000609349
Location (hg38): chr2:105249404-105249794
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 391 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609349.1
Alternative gene names: ENSG00000272861.1; RP11-332H14.1; AC012360.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -267.5054 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGFBRAP1-14:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TGFBRAP1-14:1
4.0 lnc-TGFBRAP1-14:1
4.1 lnc-TGFBRAP1-14:1
5.0 lnc-TGFBRAP1-14:1
5.1 lnc-AFF3-77:1
5.2 lnc-TGFBRAP1-14:1