Transcript: lnc-TGFBRAP1-18:1

Basic information

LNCipedia transcript ID: lnc-TGFBRAP1-18:1 
LNCipedia gene ID: lnc-TGFBRAP1-18
RefSeq ID: NR_037885
Location (hg38): chr2:104378850-104408332
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1084 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT072908; NR_037885; NR_037885.2
Alternative gene names: LOC100287010


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.4042 non-coding 
CPAT coding probability 61.60% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TGFBRAP1-18:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TGFBRAP1-18:1
4.0 lnc-TGFBRAP1-18:1
4.1 lnc-TGFBRAP1-18:1
5.0 lnc-TGFBRAP1-18:1
5.1 lnc-AFF3-69:1
5.2 lnc-TGFBRAP1-18:1