Transcript: lnc-TGFBRAP1-1:3

Basic information

LNCipedia transcript ID: lnc-TGFBRAP1-1:3 
LNCipedia gene ID: lnc-TGFBRAP1-1
Ensembl Gene ID: ENSG00000272994
Ensembl Transcript ID: ENST00000610036
Location (hg38): chr2:105334027-105337475
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3449 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000610036.1
Alternative gene names: ENSG00000272994.1; RP11-332H14.2; AC012360.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.0837 non-coding 
CPAT coding probability 3.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGFBRAP1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TGFBRAP1-1:3
4.0 lnc-TGFBRAP1-1:3
4.1 lnc-TGFBRAP1-1:3
5.0 lnc-TGFBRAP1-1:3
5.1 lnc-AFF3-80:8
5.2 lnc-TGFBRAP1-1:3