Transcript: lnc-TGFBRAP1-1:5

Basic information

LNCipedia transcript ID: lnc-TGFBRAP1-1:5 
LNCipedia gene ID: lnc-TGFBRAP1-1
Location (hg38): chr2:105334040-105335770
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1641 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT072986
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.8404 non-coding 
CPAT coding probability 1.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGFBRAP1-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TGFBRAP1-1:5
4.0 lnc-TGFBRAP1-1:5
4.1 lnc-TGFBRAP1-1:5
5.0 lnc-TGFBRAP1-1:5
5.1 lnc-AFF3-80:13
5.2 lnc-TGFBRAP1-1:5