Transcript: lnc-TGFBRAP1-4:6

Basic information

LNCipedia transcript ID: lnc-TGFBRAP1-4:6 
LNCipedia gene ID: lnc-TGFBRAP1-4
Location (hg38): chr2:104936411-105038505
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 481 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000224509.1|ENST00000456519.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -49.414 non-coding 
CPAT coding probability 10.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGFBRAP1-4:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TGFBRAP1-4:6
5.0 lnc-TGFBRAP1-4:6
5.1 lnc-AFF3-74:1
5.2 lnc-TGFBRAP1-4:6