Transcript: lnc-TGIF2LX-1:2

Basic information

LNCipedia transcript ID: lnc-TGIF2LX-1:2 
LNCipedia gene ID: lnc-TGIF2LX-1
Ensembl Gene ID: ENSG00000225012
Ensembl Transcript ID: ENST00000435867
Location (hg38): chrX:89423738-89446983
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 308 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017000; ENST00000435867; ENST00000435867.1; RP13-348B13.2-001; OTTHUMT00000057422.1; NONHSAT137798
Alternative gene names: XLOC_008022; linc-TGIF2LX; ENSG00000225012; RP13-348B13.2; ENSG00000225012.1; OTTHUMG00000021953.1; ENSG00000225012.5; AL121872.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.9244 non-coding 
CPAT coding probability 0.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TGIF2LX-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TGIF2LX-1:2
3.1 lnc-TGIF2LX-1:2
4.0 lnc-TGIF2LX-1:2
4.1 lnc-TGIF2LX-1:2
5.0 lnc-TGIF2LX-1:2
5.1 lnc-NHSL2-88:2
5.2 lnc-TGIF2LX-1:2