Transcript: lnc-THAP10-2:2

Basic information

LNCipedia transcript ID: lnc-THAP10-2:2 
LNCipedia gene ID: lnc-THAP10-2
Location (hg38): chr15:70851427-70853525
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 473 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000560052.1; RP11-795G3.3-001; OTTHUMT00000417201.1; NONHSAT047021
Alternative gene names: ENSG00000259537.1; RP11-795G3.3; OTTHUMG00000133364.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.9995 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-THAP10-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-THAP10-2:2
4.0 lnc-THAP10-2:2
4.1 lnc-THAP10-2:2
5.0 lnc-THAP10-2:2
5.1 lnc-PKM-33:2
5.2 lnc-THAP10-2:2