Transcript: lnc-THOC3-2:16

Basic information

LNCipedia transcript ID: lnc-THOC3-2:16 
LNCipedia gene ID: lnc-THOC3-2
Ensembl Gene ID: ENSG00000248596
Ensembl Transcript ID: ENST00000515403
Location (hg38): chr5:176143085-176185155
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3632 bp
Exons: 23
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000515403; ENST00000515403.1; RP11-844P9.2-001; OTTHUMT00000371986.1; NONHSAT147370; ENST00000515403.5
Alternative gene names: ENSG00000248596; RP11-844P9.2; ENSG00000248596.1; OTTHUMG00000163191.1; ENSG00000248596.2; ENSG00000248596.6; ENSG00000248596.7; RP11-844P9.5; AC139491.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 42.3164 non-coding 
CPAT coding probability 42.91% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-THOC3-2:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-826N14.2.1-2:4
3.1 lnc-RP11-826N14.2.1-2:4
4.0 lnc-RP11-826N14.2.1-2:4
4.1 lnc-RP11-826N14.2.1-2:4
5.0 lnc-RP11-826N14.2.1-2:4
5.1 lnc-PDLIM7-50:16
5.2 lnc-THOC3-2:16