Transcript: lnc-THOC3-2:20

Basic information

LNCipedia transcript ID: lnc-THOC3-2:20 
LNCipedia gene ID: lnc-THOC3-2
Ensembl Gene ID: ENSG00000283235
Ensembl Transcript ID: ENST00000510155
Location (hg38): chr5:176173353-176175393
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 544 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510155; ENST00000510155.1; RP11-844P9.2-008; OTTHUMT00000371992.1; NONHSAT105315
Alternative gene names: ENSG00000248596; RP11-844P9.2; ENSG00000248596.1; OTTHUMG00000163191.1; ENSG00000248596.2; ENSG00000248596.6; ENSG00000283235.1; RP11-844P9.6; AC139493.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -57.9869 non-coding 
CPAT coding probability 4.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-THOC3-2:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-826N14.2.1-2:5
3.1 lnc-RP11-826N14.2.1-2:5
4.0 lnc-RP11-826N14.2.1-2:5
4.1 lnc-RP11-826N14.2.1-2:5
5.0 lnc-RP11-826N14.2.1-2:5
5.1 lnc-PDLIM7-50:20
5.2 lnc-THOC3-2:20