Transcript: lnc-THOC3-2:6

Basic information

LNCipedia transcript ID: lnc-THOC3-2:6 
LNCipedia gene ID: lnc-THOC3-2
Location (hg38): chr5:176173352-176199295
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1605 bp
Exons: 13
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000508056; ENST00000508056.1; RP11-844P9.2-002; OTTHUMT00000371987.1; NONHSAT105314
Alternative gene names: ENSG00000248596; RP11-844P9.2; ENSG00000248596.1; OTTHUMG00000163191.1; ENSG00000248596.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.2691 non-coding 
CPAT coding probability 5.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-THOC3-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-826N14.2.1-2:1
3.1 lnc-RP11-826N14.2.1-2:1
4.0 lnc-RP11-826N14.2.1-2:1
4.1 lnc-RP11-826N14.2.1-2:1
5.0 lnc-RP11-826N14.2.1-2:1
5.1 lnc-PDLIM7-50:6
5.2 lnc-THOC3-2:6