Transcript: lnc-THSD4-3:3

Basic information

LNCipedia transcript ID: lnc-THSD4-3:3 
LNCipedia gene ID: lnc-THSD4-3
Location (hg38): chr15:71807082-71809502
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 238 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023454; NONHSAT047046
Alternative gene names: XLOC_011300; linc-NR2E3-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 13.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-THSD4-3:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-THSD4-3:1
3.1 lnc-THSD4-3:3
4.0 lnc-THSD4-3:3
4.1 lnc-THSD4-3:3
5.0 lnc-THSD4-3:3
5.1 lnc-ARIH1-13:1
5.2 lnc-THSD4-3:3