Transcript: lnc-TICAM1-1:1

Basic information

LNCipedia transcript ID: lnc-TICAM1-1:1 
LNCipedia gene ID: lnc-TICAM1-1
Ensembl Gene ID: ENSG00000269604
Ensembl Transcript ID: ENST00000596170
Location (hg38): chr19:4794982-4795559
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 403 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT060658; ENST00000596170.1
Alternative gene names: ENSG00000269604.1; AC005523.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.5245 non-coding 
CPAT coding probability 1.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TICAM1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TICAM1-1:1
4.0 lnc-TICAM1-1:1
4.1 lnc-TICAM1-1:1
5.0 lnc-TICAM1-1:1
5.1 lnc-ZNF77-121:1
5.2 lnc-TICAM1-1:1