Transcript: lnc-TIMM21-5:3

Basic information

LNCipedia transcript ID: lnc-TIMM21-5:3 
LNCipedia gene ID: lnc-TIMM21-5
Location (hg38): chr18:72868684-72881399
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 399 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026362; NONHSAT059819
Alternative gene names: XLOC_012713; linc-C18orf55-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -213.4398 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TIMM21-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TIMM21-5:2
3.1 lnc-TIMM21-5:3
4.0 lnc-TIMM21-5:3
4.1 lnc-TIMM21-5:3
5.0 lnc-TIMM21-5:3
5.1 lnc-KCNG2-72:9
5.2 lnc-TIMM21-5:3