Transcript: lnc-TIMP3-5:1

Basic information

LNCipedia transcript ID: lnc-TIMP3-5:1 
LNCipedia gene ID: lnc-TIMP3-5
Ensembl Gene ID: ENSG00000230741
Ensembl Transcript ID: ENST00000453924
Location (hg38): chr22:33320865-33322813
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 484 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453924.1; SC22CB-1D7.1-001; OTTHUMT00000320576.1; NONHSAT085001
Alternative gene names: ENSG00000230741.1; SC22CB-1D7.1; OTTHUMG00000150925.1; Z82173.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.1431 non-coding 
CPAT coding probability 20.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TIMP3-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TIMP3-5:1
4.0 lnc-TIMP3-5:1
4.1 lnc-TIMP3-5:1
5.0 lnc-TIMP3-5:1
5.1 lnc-SFI1-28:1
5.2 lnc-TIMP3-5:1