Transcript: lnc-TKT-3:5

Basic information

LNCipedia transcript ID: lnc-TKT-3:5 
LNCipedia gene ID: lnc-TKT-3
Location (hg38): chr3:53304221-53347524
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 581 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000559748.1; DCP1A-010; OTTHUMT00000416393.1
Alternative gene names: ENSG00000162290.11; DCP1A; OTTHUMG00000158193.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -182.9063 non-coding 
CPAT coding probability 97.61% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TKT-3:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TKT-1:6
4.0 lnc-TKT-1:6
4.1 lnc-TKT-1:6
5.0 lnc-TKT-1:6
5.1 lnc-ACTR8-6:5
5.2 lnc-TKT-3:5