Transcript: lnc-TLCD1-3:2

Basic information

LNCipedia transcript ID: lnc-TLCD1-3:2 
LNCipedia gene ID: lnc-TLCD1-3
Ensembl Gene ID: ENSG00000265073
Ensembl Transcript ID: ENST00000584779
Location (hg38): chr17:28732963-28742765
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 442 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000584779.1; AC010761.6-002; OTTHUMT00000446488.1; NONHSAT052647
Alternative gene names: ENSG00000265073.1; AC010761.6; OTTHUMG00000179453.7; AC010761.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.6502 non-coding 
CPAT coding probability 10.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TLCD1-3:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C17orf63-3:2
4.0 lnc-TLCD1-3:2
4.1 lnc-TLCD1-3:2
5.0 lnc-TLCD1-3:2
5.1 lnc-SLC6A4-67:2
5.2 lnc-TLCD1-3:2