Transcript: lnc-TLE3-4:1

Basic information

LNCipedia transcript ID: lnc-TLE3-4:1 
LNCipedia gene ID: lnc-TLE3-4
Ensembl Gene ID: ENSG00000259309
Ensembl Transcript ID: ENST00000561316
Location (hg38): chr15:69820756-69822856
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 547 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561316.1; RP11-19J5.2-001; OTTHUMT00000416827.1; NONHSAT046982
Alternative gene names: ENSG00000259309.1; RP11-19J5.2; OTTHUMG00000172101.1; AC021818.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.8773 non-coding 
CPAT coding probability 2.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TLE3-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TLE3-4:1
4.0 lnc-TLE3-4:1
4.1 lnc-TLE3-4:1
5.0 lnc-TLE3-4:1
5.1 lnc-CLN6-19:1
5.2 lnc-TLE3-4:1