Transcript: lnc-TLN2-1:1

Basic information

LNCipedia transcript ID: lnc-TLN2-1:1 
LNCipedia gene ID: lnc-TLN2-1
Ensembl Gene ID: ENSG00000259727
Ensembl Transcript ID: ENST00000557900
Location (hg38): chr15:62895812-62899543
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1225 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000557900.1; RP11-1069G10.2-001; OTTHUMT00000416590.1; NONHSAT046585
Alternative gene names: ENSG00000259727.1; RP11-1069G10.2; OTTHUMG00000172040.1; AC103740.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.8135 non-coding 
CPAT coding probability 2.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TLN2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TLN2-1:1
4.0 lnc-TLN2-1:1
4.1 lnc-TLN2-1:1
5.0 lnc-TLN2-1:1
5.1 lnc-MAP2K1-56:1
5.2 lnc-TLN2-1:1