Transcript: lnc-TLN2-3:2

Basic information

LNCipedia transcript ID: lnc-TLN2-3:2 
LNCipedia gene ID: lnc-TLN2-3
Ensembl Gene ID: ENSG00000261296
Ensembl Transcript ID: ENST00000568092
Location (hg38): chr15:62274855-62278365
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3511 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568092.1; RP11-299H22.6-001; OTTHUMT00000422150.1; NONHSAT046556; FPKM1_group_10310_transcript_3
Alternative gene names: ENSG00000261296.1; RP11-299H22.6; OTTHUMG00000173105.1; AC126323.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.8403 non-coding 
CPAT coding probability 0.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TLN2-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TLN2-3:2
4.0 lnc-TLN2-3:2
4.1 lnc-TLN2-3:2
5.0 lnc-TLN2-3:2
5.1 lnc-MAP2K1-64:2
5.2 lnc-TLN2-3:2