Transcript: lnc-TM2D2-1:1

Basic information

LNCipedia transcript ID: lnc-TM2D2-1:1 
LNCipedia gene ID: lnc-TM2D2-1
Ensembl Gene ID: ENSG00000253645
Ensembl Transcript ID: ENST00000520863
Location (hg38): chr8:38970360-38973011
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 650 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520863.1; CTD-2544N14.3-001; OTTHUMT00000377248.1; NONHSAT126135
Alternative gene names: ENSG00000253645.1; CTD-2544N14.3; OTTHUMG00000164094.1; AC108863.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.0328 non-coding 
CPAT coding probability 0.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TM2D2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TM2D2-1:1
4.0 lnc-TM2D2-1:1
4.1 lnc-TM2D2-1:1
5.0 lnc-TM2D2-1:1
5.1 lnc-C8orf86-34:1
5.2 lnc-TM2D2-1:1