Transcript: lnc-TM2D2-3:1

Basic information

LNCipedia transcript ID: lnc-TM2D2-3:1 
LNCipedia gene ID: lnc-TM2D2-3
Ensembl Gene ID: ENSG00000253829
Ensembl Transcript ID: ENST00000459965
Location (hg38): chr8:38844866-38846439
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 387 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000459965.2; RP11-723D22.3-001; OTTHUMT00000377184.1; NONHSAT126129
Alternative gene names: ENSG00000253829.1; RP11-723D22.3; OTTHUMG00000164087.1; AC067817.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 34.8724 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TM2D2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TM2D2-3:1
4.0 lnc-TM2D2-3:1
4.1 lnc-TM2D2-3:1
5.0 lnc-TM2D2-3:1
5.1 lnc-C8orf86-30:1
5.2 lnc-TM2D2-3:1