Transcript: lnc-TM4SF1-1:1

Basic information

LNCipedia transcript ID: lnc-TM4SF1-1:1 
LNCipedia gene ID: lnc-TM4SF1-1
Ensembl Gene ID: ENSG00000243885
Ensembl Transcript ID: ENST00000462931
Location (hg38): chr3:149384179-149385800
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1001 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005845; ENST00000462931; ENST00000462931.1; RP11-278L15.2-001; OTTHUMT00000356364.1; NONHSAT092647
Alternative gene names: XLOC_003280; linc-TM4SF1; ENSG00000243885; RP11-278L15.2; ENSG00000243885.1; OTTHUMG00000159595.1; AC108751.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.0036 non-coding 
CPAT coding probability 5.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TM4SF1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TM4SF1-1:1
3.1 lnc-TM4SF1-1:1
4.0 lnc-TM4SF1-1:1
4.1 lnc-TM4SF1-1:1
5.0 lnc-TM4SF1-1:1
5.1 lnc-CP-9:1
5.2 lnc-TM4SF1-1:1