Transcript: lnc-TM4SF18-1:1

Basic information

LNCipedia transcript ID: lnc-TM4SF18-1:1 
LNCipedia gene ID: lnc-TM4SF18-1
Location (hg38): chr3:149276510-149291800
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 566 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000482639.1; RP11-206M11.4-001; OTTHUMT00000356325.1; NONHSAT092638
Alternative gene names: ENSG00000244162.1; RP11-206M11.4; OTTHUMG00000159581.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.1529 non-coding 
CPAT coding probability 6.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TM4SF18-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TM4SF18-1:1
4.0 lnc-TM4SF18-1:1
4.1 lnc-TM4SF18-1:1
5.0 lnc-TM4SF18-1:1
5.1 lnc-CP-6:1
5.2 lnc-TM4SF18-1:1