Transcript: lnc-TM4SF20-1:2

Basic information

LNCipedia transcript ID: lnc-TM4SF20-1:2 
LNCipedia gene ID: lnc-TM4SF20-1
Ensembl Gene ID: ENSG00000236432
Ensembl Transcript ID: ENST00000396588
Location (hg38): chr2:227245710-227325186
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2214 bp
Exons: 10
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000396588.2; AC097662.2-001; OTTHUMT00000313761.1; NONHSAT077207; ENST00000396588.6
Alternative gene names: ENSG00000236432.2; AC097662.2; OTTHUMG00000149890.2; ENSG00000236432.3; ENSG00000236432.7; AC097662.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.0242 non-coding 
CPAT coding probability 4.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TM4SF20-1:2 no no no no

Available literature

  1. Li (2015), Distinct expression profiles of lncRNAs between regressive and mature scars., Cell. Physiol. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TM4SF20-1:2
4.0 lnc-TM4SF20-1:2
4.1 lnc-TM4SF20-1:2
5.0 lnc-TM4SF20-1:2
5.1 lnc-WDFY1-25:2
5.2 lnc-TM4SF20-1:2