Transcript: lnc-TM4SF20-1:6

Basic information

LNCipedia transcript ID: lnc-TM4SF20-1:6 
LNCipedia gene ID: lnc-TM4SF20-1
RefSeq ID: NR_102371
Location (hg38): chr2:227221052-227325164
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2502 bp
Exons: 14
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT077204; NR_102371; NR_102371.1
Alternative gene names: LOC654841


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.0242 non-coding 
CPAT coding probability 8.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TM4SF20-1:6 no no no no

Available literature

  1. Li (2015), Distinct expression profiles of lncRNAs between regressive and mature scars., Cell. Physiol. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TM4SF20-1:6
4.0 lnc-TM4SF20-1:6
4.1 lnc-TM4SF20-1:6
5.0 lnc-TM4SF20-1:6
5.1 lnc-WDFY1-25:4
5.2 lnc-TM4SF20-1:6