Transcript: lnc-TM9SF2-2:1

Basic information

LNCipedia transcript ID: lnc-TM9SF2-2:1 
LNCipedia gene ID: lnc-TM9SF2-2
Location (hg38): chr13:99318154-99318955
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 444 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000339009.5; UBAC2-IT1-001; OTTHUMT00000045583.1; NONHSAT034911
Alternative gene names: ENSG00000203341.3; UBAC2-IT1; OTTHUMG00000017264.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.8884 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TM9SF2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TM9SF2-2:1
4.0 lnc-TM9SF2-2:1
4.1 lnc-TM9SF2-2:1
5.0 lnc-TM9SF2-2:1
5.1 lnc-COL4A2-91:1
5.2 lnc-TM9SF2-2:1