Transcript: lnc-TMC2-5:1

Basic information

LNCipedia transcript ID: lnc-TMC2-5:1 
LNCipedia gene ID: lnc-TMC2-5
Location (hg38): chr20:2509200-2511660
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2461 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000052263.1|ENCT00000258063.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 1.9778 non-coding 
CPAT coding probability 1.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMC2-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TMC2-5:1
5.0 lnc-TMC2-5:1
5.1 lnc-MAVS-25:1
5.2 lnc-TMC2-5:1