Transcript: lnc-TMC7-3:1

Basic information

LNCipedia transcript ID: lnc-TMC7-3:1 
LNCipedia gene ID: lnc-TMC7-3
Ensembl Gene ID: ENSG00000257563
Ensembl Transcript ID: ENST00000549796
Location (hg38): chr16:18402146-18403604
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1459 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000549796.1; MIR3180-3-001; OTTHUMT00000409525.1; NONHSAT140837
Alternative gene names: ENSG00000257563.1; MIR3180-3; OTTHUMG00000170522.1; AC126755.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 50.1686 non-coding 
CPAT coding probability 5.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMC7-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMC7-3:1
4.0 lnc-TMC7-3:1
4.1 lnc-TMC7-3:1
5.0 lnc-TMC7-3:1
5.1 lnc-ITPRIPL2-11:1
5.2 lnc-TMC7-3:1