Transcript: lnc-TMCO1-1:1

Basic information

LNCipedia transcript ID: lnc-TMCO1-1:1 
LNCipedia gene ID: lnc-TMCO1-1
Location (hg38): chr1:165895879-165900355
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 347 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000455257.1; RP11-525G13.2-001; OTTHUMT00000096752.1; NONHSAT007339
Alternative gene names: ENSG00000236364.1; RP11-525G13.2; OTTHUMG00000040116.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -174.8374 non-coding 
CPAT coding probability 3.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMCO1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMCO1-1:1
4.0 lnc-TMCO1-1:1
4.1 lnc-TMCO1-1:1
5.0 lnc-TMCO1-1:1
5.1 lnc-SH2D1B-48:2
5.2 lnc-TMCO1-1:1