Transcript: lnc-TMEM100-2:1

Basic information

LNCipedia transcript ID: lnc-TMEM100-2:1 
LNCipedia gene ID: lnc-TMEM100-2
Ensembl Gene ID: ENSG00000262052
Ensembl Transcript ID: ENST00000571972
Location (hg38): chr17:55842677-55872939
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 585 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000571972.1; RP11-763E3.1-001; OTTHUMT00000439532.1; NONHSAT054827
Alternative gene names: ENSG00000262052.1; RP11-763E3.1; OTTHUMG00000177894.1; AC090618.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.2346 non-coding 
CPAT coding probability 2.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM100-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM100-2:1
4.0 lnc-TMEM100-2:1
4.1 lnc-TMEM100-2:1
5.0 lnc-TMEM100-2:1
5.1 lnc-PTRH2-58:1
5.2 lnc-TMEM100-2:1