Transcript: lnc-TMEM105-2:11

Basic information

LNCipedia transcript ID: lnc-TMEM105-2:11 
LNCipedia gene ID: lnc-TMEM105-2
Location (hg38): chr17:81375062-81382617
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1997 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026170; NONHSAT056471
Alternative gene names: XLOC_012586; linc-TMEM105-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.8154 non-coding 
CPAT coding probability 50.03% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMEM105-2:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM105-2:7
3.1 lnc-TMEM105-2:11
4.0 lnc-TMEM105-2:11
4.1 lnc-TMEM105-2:11
5.0 lnc-TMEM105-2:11
5.1 lnc-NPLOC4-13:28
5.2 lnc-TMEM105-2:11