Transcript: lnc-TMEM105-2:2

Basic information

LNCipedia transcript ID: lnc-TMEM105-2:2 
LNCipedia gene ID: lnc-TMEM105-2
Location (hg38): chr17:81384100-81385450
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1234 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00026175
Alternative gene names: XLOC_012586; linc-TMEM105-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.179 non-coding 
CPAT coding probability 8.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMEM105-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM105-2:2
3.1 lnc-TMEM105-2:2
4.0 lnc-TMEM105-2:2
4.1 lnc-TMEM105-2:2
5.0 lnc-TMEM105-2:2
5.1 lnc-NPLOC4-13:18
5.2 lnc-TMEM105-2:2