Transcript: lnc-TMEM105-2:30

Basic information

LNCipedia transcript ID: lnc-TMEM105-2:30 
LNCipedia gene ID: lnc-TMEM105-2
Location (hg38): chr17:81388185-81393487
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4737 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025781; NONHSAT056485
Alternative gene names: XLOC_012587; linc-TMEM105-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.4133 non-coding 
CPAT coding probability 60.11% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TMEM105-2:30 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM105-3:1
3.1 lnc-TMEM105-3:1
4.0 lnc-TMEM105-3:1
4.1 lnc-TMEM105-2:30
5.0 lnc-TMEM105-2:30
5.1 lnc-NPLOC4-13:11
5.2 lnc-TMEM105-2:30